Oh no! I don't use Cakewalk very often, I forgot it can rearrange and move events like this. It looks like Cakewalk decided there wasn't enough time at the beginning to send all of the initial setup events, so Cakewalk moved all the notes one measure later. Additionally, when you open a MIDI file, I think Cakewalk likes to store things in its own kind of internal format. So when you save back to the MIDI file, events can get rearranged or moved compared to the original MIDI file.
As an alternative for you, I'm thinking of posting how to do a fade-out in Sekaiju. It's a little more work, but it shouldn't rearrange or move events in your MIDI file.
The rest of this post is technical discussion, mainly about what Cakewalk rearranged.
Anything wrong?
is anything inherently wrong with the order of these events [...]?
My only recommendation is to put the track name at time zero and before any events that would get sent out to the MIDI port (that is, before any event with a MIDI channel number or any System Exclusive event). I remember reading somewhere that some MIDI file software might only search for a track name until it reaches an event for MIDI output or it encounters a non-zero delta time. So if the track name comes after an event for MIDI output, some software might not show the track name.
First track
the first track (technically track 2)
You should be aware that in a Format 1 MIDI file, in the actual bytes of the file, the first track (the first MTrk chunk) is used for events like tempo, time signature, and key signature, and can't contain any notes.
Often, MIDI file editors (including Cakewalk) do not show this first track in their track list window. They reserve their track list window for tracks that can contain notes. You might have to use another window or a timeline header to see things like the tempo, time signature, or key signature events. For example, in Cakewalk, in the View menu, you can open the windows called Markers, Tempo, or Meter/Key to view things that are stored in the first track of the MIDI file.
Any time you or other people use different kinds of software to examine a MIDI file, you have to be careful when discussing which track you are referring to. In my comments below I will call the actual first track in the MIDI file "the conductor track", and I will call the tracks after that "the first note track", "the second note track", and so on.
Cakewalk view notes
As mentioned above, Cakewalk will put various events from the conductor track into their own special windows: Markers, Tempo, and Meter/Key.
Cakewalk will put the Track Name from the conductor track, Copyright events from any track, and Text events at time zero from any track into its Notes window (View menu, Browser command, Notes tab). It won't show them as events in the Event List window.
Cakewalk will consider the Track Name and initial Bank and Program Change events in a note track as a track property. It won't show them as events in the Event List window, only as values for the track in the Track List window.
Cakewalk will combine note start and note end events into a single "Note" event that has a start time, velocity, and duration.
Cakewalk will combine the Control Change events used for sending a RPN or NRPN into a single "RPN" or "NRPN" event the Event List.
With your MIDI file
Cakewalk rearranged many of the initial setup events.
It looks like Cakewalk decided there wasn't enough time at the beginning to send all of the initial setup events, so Cakewalk moved all the notes one measure later.
Some of the tracks have volume events before the first note event. In general, Cakewalk didn't move volume events before the first note event (except if it was very close to the beginning, it might move it one beat later). But at the point the first note event happens, Cakewalk moved the first note and every following event in the track one measure later.
In particular, the 8th to 11th note tracks are all for Channel 10 percussion sounds. Some of these tracks contain various volume events before the first note. Perhaps those volume events were originally intended to affect Channel 10 notes found on the other tracks.
More details
It looks like Cakewalk rearranges the order of initial setup events when you open the file, but at this point the events still have the same measure:beat:tick timestamps, they've just been rearranged into a different order within the events at same timestamp.
Once you save the file and re-open it in Cakewalk (or look at it in other MIDI file software), you will see Cakewalk has moved some events to a new measure:beat:tick timestamp:
Some of the initial setup events were moved around 1 to 3 ticks later.
Some of the initial setup events were moved 1 beat later.
All of the note events were moved 1 measure later, and any event after the first note event in each track was also moved 1 measure later.
Any other event before the first note event in each track was not moved.
It moved the Copyright event from the first note track to the conductor track.
Example pictures
I used Sekaiju to look at the file "02 Solo Sortie WIP2.mid" before and after I edited it with Cakewalk.
Note: In Sekaiju I changed the setup options to number the tracks starting with 0. So the "conductor track" is shown as track 0 and "the first note track" is shown as track 1.
1-event-lists.png
These event lists show the beginning of the 1st note track before and after saving the file in Cakewalk.
The Copyright event (marked with an asterisk) was moved to the conductor track.
The initial setup events were rearranged, and some of them moved 1 to 3 ticks or 1 beat later.
The first note and everything after it was moved one measure later.
2-piano-rolls.png
These piano rolls show the 10th note track notes (the very small lines in the top panes) and Volume events (bottom panes). The left window is before and the right window is after saving the file in Cakewalk. You can see Cakewalk moved the note events and the volume events after the first note event one measure later. The volume events before the first note event weren't moved.
3-track-lists.png
These track lists show the 8th to 11th note tracks.
In the right pane of the Track List, Sekaiju draws vertical lines to represent events like Control Change or Pitch Bend. The height represents the value, or a little circle represents zero. In your MIDI file these vertical lines are usually Volume messages.
In the right pane of the Track List, Sekaiju draws horizontal lines to represent notes.
If you look closely, you can see where the first note and other events were moved 1 measure later.
8th note track: there's a new gap at measure 1.
9th note track: there's a new gap at measure 27.
10th note track: there's a new gap at about measure 31.
11th note track: there's a new gap at measure 1.
As mentioned previously, in your MIDI file, the 8th to 11th note tracks are all for Channel 10 percussion sounds. Some of these tracks contain various volume events before the first note. Perhaps those volume events were originally intended to affect Channel 10 notes found on the other tracks.
Slightly related - Reordering simultaneous note start and note end
Previous threads here have mentioned rearranging the order of simultaneous note start and note end events for the same pitch and channel:
Reordering simultaneous events
SMF Format 1 Tracks and Channels
I now think this is an artifact of how some MIDI editors store notes. If a MIDI file editor combines the note start and note end events that are in the MIDI file into an internal format "note" event that has a start time and duration, then when it saves that back to a MIDI file, it will put the note end before the note start at the same time on a track. If there's a note start and note end for the same pitch and channel on different tracks, then the re-saving doesn't rearrange the file events, but when it plays the notes, it will play the note ends on every track before the note starts at the same time on every track.